IIT Publications Search

Publications
2024
Maestri S., Furlan M., Mulroney L., Coscujuela Tarrero L., Ugolini C., Dalla Pozza F., Leonardi T., Birney E., Nicassio F., Pelizzola M.
Benchmarking of computational methods for m6A profiling with Nanopore direct RNA sequencing
Briefings in Bioinformatics
DOI 10.1093/bib/bbae001 Article Journal
2023
Giambruno R., Zacco E., Ugolini C., Vandelli A., Mulroney L., DOnghia M., Giuliani B., Criscuolo E., Castelli M., Clementi N., Clementi M., Mancini N., Bonaldi T., Gustincich S., Leonardi T., Tartaglia G., Nicassio F.
Discovering host protein interactions specific for SARS-CoV-2 RNA genome
Molecular Therapy - Nucleic Acids
DOI 10.1101/2022.07.18.499583 Article in Press Journal
2023
Lattanzi G., Strati F., Diaz-Basabe A., Perillo F., Amoroso C., Protti G., Rita Giuffre M., Iachini L., Baeri A., Baldari L., Cassinotti E., Ghidini M., Galassi B., Lopez G., Noviello D., Porretti L., Trombetta E., Messuti E., Mazzarella L., Iezzi G., Nicassio F., Granucci F., Vecchi M., Caprioli F., Facciotti F.
iNKT cell-neutrophil crosstalk promotes colorectal cancer pathogenesis
Mucosal Immunology
2022
Carvelli A., Setti A., Desideri F., Galfre S.G., Biscarini S., Santini T., Colantoni A., Peruzzi G., Marzi M.J., Capauto D., Di Angelantonio S., Ballarino M., Nicassio F., Laneve P., Bozzoni I.
A multifunctional locus controls motor neuron differentiation through short and long noncoding RNAs
EMBO Journal, vol. 41, (no. 13)
2022
Tordonato C., Marzi M.J., Di Fiore P.P., Nicassio F.
microRNAs transcriptional profiling of mammary stem cells isolated by PKH26 staining and FACS sorting
Methods in Cell Biology, vol. 170, pp. 59-79
DOI 10.1016/bs.mcb.2022.02.007 Book Chapter Book Series
2022
Ugolini C., Mulroney L., Leger A., Castelli M., Criscuolo E., Williamson M.K., Davidson A.D., Almuqrin A., Giambruno R., Jain M., Frige G., Olsen H., Tzertzinis G., Schildkraut I., Wulf M.G., Correa I.R., Ettwiller L., Clementi N., Clementi M., Mancini N., Birney E., Akeson M., Nicassio F., Matthews D.A., Leonardi T.
Nanopore ReCappable sequencing maps SARS-CoV-2 5′ capping sites and provides new insights into the structure of sgRNAs
Nucleic Acids Research, vol. 50, (no. 6), pp. 3475-3489
2022
Brancato V., Brentari I., Coscujuela Tarrero L., Furlan M., Nicassio F., Denti M.A.
News from around the RNA world: new avenues in RNA biology, biotechnology and therapeutics from the 2022 SIBBM meeting
Biology Open, vol. 11, (no. 10)
2022
Simeone I., Rubolino C., Noviello T.M.R., Farinello D., Cerulo L., Marzi M.J., Nicassio F.
Prediction and pan-cancer analysis of mammalian transcripts involved in target directed miRNA degradation
Nucleic Acids Research, vol. 50, (no. 4), pp. 2019-2035
2022
Giambruno R., Nicassio F.
Proximity-dependent biotinylation technologies for mapping RNA-protein interactions in live cells
Frontiers in Molecular Biosciences, vol. 9
2021
Bido S., Muggeo S., Massimino L., Marzi M.J., Giannelli S.G., Melacini E., Nannoni M., Gambare D., Bellini E., Ordazzo G., Rossi G., Maffezzini C., Iannelli A., Luoni M., Bacigaluppi M., Gregori S., Nicassio F., Broccoli V.
Author Correction: Microglia-specific overexpression of α-synuclein leads to severe dopaminergic neurodegeneration by phagocytic exhaustion and oxidative toxicity (Nature Communications, (2021), 12, 1, (6237), 10.1038/s41467-021-26519-x)
Nature Communications, vol. 12, (no. 1)
2021
Bido S., Muggeo S., Massimino L., Marzi M.J., Ordazzo M., Giannelli S.G., Nannoni M., iannelli A., Melacini E., Bagicaluppi M., Gregori S., Nicassio F., Broccoli V.
Microglia-specific overexpression of alpha-synuclein leads to severe dopaminergic neurodegeneration by phagocytic exhaustion and oxidative toxicity
Nature Communications
Article in Press Journal
2021
Bido S., Muggeo S., Massimino L., Marzi M.J., Giannelli S.G., Melacini E., Nannoni M., Gambare D., Bellini E., Ordazzo G., Rossi G., Maffezzini C., Iannelli A., Luoni M., Bagicaluppi M., Gregori S., Nicassio F., Broccoli V.
Microglia-specific overexpression of α-synuclein leads to severe dopaminergic neurodegeneration by phagocytic exhaustion and oxidative toxicity
Nature Communications, vol. 12, (no. 1)
2021
Tordonato C., Marzi M.J., Giangreco G., Freddi S., Bonetti P., Tosoni D., Di Fiore P.P., Nicassio F.
Mir-146 connects stem cell identity with metabolism and pharmacological resistance in breast cancer
Journal of Cell Biology, vol. 220, (no. 5)
2020
Bonetti P., Climent M., Panebianco F., Tordonato C., Santoro A., Marzi M.J., Pelicci P.G., Ventura A., Nicassio F.
Correction: Dual role for miR-34a in the control of early progenitor proliferation and commitment in the mammary gland and in breast cancer (Oncogene, (2019), 38, 3, (360-374), 10.1038/s41388-018-0445-3)
Oncogene, vol. 39, (no. 10)
2020
Mazzara P.G., Muggeo S., Luoni M., Massimino L., Zaghi M., Valverde P.T.-T., Brusco S., Marzi M.J., Palma C., Colasante G., Iannielli A., Paulis M., Cordiglieri C., Giannelli S.G., Podini P., Gellera C., Taroni F., Nicassio F., Rasponi M., Broccoli V.
Frataxin gene editing rescues Friedreich’s ataxia pathology in dorsal root ganglia organoid-derived sensory neurons
Nature Communications, vol. 11, (no. 1)