Publications
2024
Maestri S., Furlan M., Mulroney L., Coscujuela Tarrero L., Ugolini C., Dalla Pozza F., Leonardi T., Birney E., Nicassio F., Pelizzola M.
Benchmarking of computational methods for m6A profiling with Nanopore direct RNA sequencing
Briefings in Bioinformatics
2023
Giambruno R., Zacco E., Ugolini C., Vandelli A., Mulroney L., DOnghia M., Giuliani B., Criscuolo E., Castelli M., Clementi N., Clementi M., Mancini N., Bonaldi T., Gustincich S., Leonardi T., Tartaglia G., Nicassio F.
Discovering host protein interactions specific for SARS-CoV-2 RNA genome
Molecular Therapy - Nucleic Acids
2023
Lattanzi G., Strati F., Diaz-Basabe A., Perillo F., Amoroso C., Protti G., Rita Giuffre M., Iachini L., Baeri A., Baldari L., Cassinotti E., Ghidini M., Galassi B., Lopez G., Noviello D., Porretti L., Trombetta E., Messuti E., Mazzarella L., Iezzi G., Nicassio F., Granucci F., Vecchi M., Caprioli F., Facciotti F.
iNKT cell-neutrophil crosstalk promotes colorectal cancer pathogenesis
Mucosal Immunology
2023
Nadalin F., Marzi M.J., Pirra Piscazzi M., Fuentes P., Procaccia S., Climent M., Bonetti P., Rubolino C., Giuliani B., Papatheodorou I., Marioni J.C., Nicassio F.
Multi-omic lineage tracing predicts the transcriptional, epigenetic and genetic determinants of cancer evolution
bioRxiv
2023
Champroux A., Yang T., Dickson D.A., Meng A., Harrington A., Liaw L., Marzi M., Nicassio F., Schlaeger T.M., Feig L. A.
Preimplantation Embryos Amplify Stress-Induced Changes in Sperm-Derived miRNA Content to Mediate Transgenerational Epigenetic Inheritance
bioRxiv
2022
Carvelli A., Setti A., Desideri F., Galfre S.G., Biscarini S., Santini T., Colantoni A., Peruzzi G., Marzi M.J., Capauto D., Di Angelantonio S., Ballarino M., Nicassio F., Laneve P., Bozzoni I.
A multifunctional locus controls motor neuron differentiation through short and long noncoding RNAs
EMBO Journal, vol. 41, (no. 13)
2022
Tordonato C., Marzi M.J., Di Fiore P.P., Nicassio F.
microRNAs transcriptional profiling of mammary stem cells isolated by PKH26 staining and FACS sorting
Methods in Cell Biology, vol. 170, pp. 59-79
2022
Ugolini C., Mulroney L., Leger A., Castelli M., Criscuolo E., Williamson M.K., Davidson A.D., Almuqrin A., Giambruno R., Jain M., Frige G., Olsen H., Tzertzinis G., Schildkraut I., Wulf M.G., Correa I.R., Ettwiller L., Clementi N., Clementi M., Mancini N., Birney E., Akeson M., Nicassio F., Matthews D.A., Leonardi T.
Nanopore ReCappable sequencing maps SARS-CoV-2 5′ capping sites and provides new insights into the structure of sgRNAs
Nucleic Acids Research, vol. 50, (no. 6), pp. 3475-3489
2022
Rubolino C., Marzi M.J., Nicassio F.
New findings into target-directed microRNA degradation mechanism
PhD Thesis
Book
2022
Brancato V., Brentari I., Coscujuela Tarrero L., Furlan M., Nicassio F., Denti M.A.
News from around the RNA world: new avenues in RNA biology, biotechnology and therapeutics from the 2022 SIBBM meeting
Biology Open, vol. 11, (no. 10)
2022
Simeone I., Rubolino C., Noviello T.M.R., Farinello D., Cerulo L., Marzi M.J., Nicassio F.
Prediction and pan-cancer analysis of mammalian transcripts involved in target directed miRNA degradation
Nucleic Acids Research, vol. 50, (no. 4), pp. 2019-2035
2022
Giambruno R., Nicassio F.
Proximity-dependent biotinylation technologies for mapping RNA-protein interactions in live cells
Frontiers in Molecular Biosciences, vol. 9
2021
Bido S., Muggeo S., Massimino L., Marzi M.J., Giannelli S.G., Melacini E., Nannoni M., Gambare D., Bellini E., Ordazzo G., Rossi G., Maffezzini C., Iannelli A., Luoni M., Bacigaluppi M., Gregori S., Nicassio F., Broccoli V.
Author Correction: Microglia-specific overexpression of α-synuclein leads to severe dopaminergic neurodegeneration by phagocytic exhaustion and oxidative toxicity (Nature Communications, (2021), 12, 1, (6237), 10.1038/s41467-021-26519-x)
Nature Communications, vol. 12, (no. 1)
2021
Bido S., Muggeo S., Massimino L., Marzi M.J., Ordazzo M., Giannelli S.G., Nannoni M., iannelli A., Melacini E., Bagicaluppi M., Gregori S., Nicassio F., Broccoli V.
Microglia-specific overexpression of alpha-synuclein leads to severe dopaminergic neurodegeneration by phagocytic exhaustion and oxidative toxicity
Nature Communications
Article in Press
Journal
2021
Bido S., Muggeo S., Massimino L., Marzi M.J., Giannelli S.G., Melacini E., Nannoni M., Gambare D., Bellini E., Ordazzo G., Rossi G., Maffezzini C., Iannelli A., Luoni M., Bagicaluppi M., Gregori S., Nicassio F., Broccoli V.
Microglia-specific overexpression of α-synuclein leads to severe dopaminergic neurodegeneration by phagocytic exhaustion and oxidative toxicity
Nature Communications, vol. 12, (no. 1)