IIT Publications Search

2022
Delli Ponti R., Broglia L., Vandelli A., Armaos A., Torrent Burgas M., Sanchez de Groot N., Tartaglia GG.
A high-throughput approach to predict A-to-I effects on RNA structure indicates a change of double-stranded content in non-coding RNAs
IUBMB Life
DOI 10.1002/iub.2673 Article Journal
2022
Cava C., Armaos A., Lang B., Tartaglia G.G., Castiglioni I.
Identification of long non-coding RNAs and RNA binding proteins in breast cancer subtypes
Scientific Reports, vol. 12, (no. 1)
2022
Arnal Segura M., Bini G., Fernandez Orth D., Samaras E., Kassis M., Aisopos F., Rambla De Argila J., Paliouras G., Garrard P., Giambartolomei C., Tartaglia GG.
Machine learning methods applied to genotyping data capture interactions between single nucleotide variants in late onset Alzheimer's disease.
Alzheimers and Dementia
2022
Vandelli A., Vocino G., Tartaglia G.G.
Phase Separation Drives SARS-CoV-2 Replication: A Hypothesis
Frontiers in Molecular Biosciences, vol. 9
2022
Cerase A., Calabrese J.M., Tartaglia G.G.
Phase separation drives X-chromosome inactivation
Nature Structural and Molecular Biology, vol. 29, (no. 3), pp. 183-185
2022
Delli Ponti R., Tartaglia G.G.
Predicting RNA Secondary Structure Using In Vitro and In Vivo Data
Methods in molecular biology (Clifton, N.J.), vol. 2404, pp. 43-52
DOI 10.1007/978-1-0716-1851-6_2 Book Chapter Book Series
2022
Monti M., Fiorentino J., Milanetti E., Gosti G., Tartaglia GG.
Prediction of Time Series Gene Expression and Structural Analysis of Gene Regulatory Networks Using Recurrent Neural Networks
Entropy
2022
Zacco E., Kantelberg O., Milanetti E., Armaos A., Panei F.P., Gregory J., Jeacock K., Clarke D.J., Chandran S., Ruocco G., Gustincich S., Horrocks M.H., Pastore A., Tartaglia G.G.
Probing TDP-43 condensation using an in silico designed aptamer
Nature Communications, vol. 13, (no. 1)
2022
Chen L., Roake CM., Maccallini P., Bavasso F., Dehghannasiri R., Santonicola P., Mendoza-Ferreira N., Scatolini L., Rizzuti L., Esposito A., Gallotta I., Francia S., Cacchione S., Galati A., Palumbo V., Kobin MA., Tartaglia GG., Colantoni A., Proietti G., Wu Y., Hammerschmidt M., De Pittà C., Sales G., Salzman J., Pellizzoni L., Wirth B., Schiavi ED., Gatti M., Artandi SE., Raffa GD.
TGS1 impacts snRNA 3'-end processing, ameliorates survival motor neuron-dependent neurological phenotypes in vivo and prevents neurodegeneration
Nucleic Acids Research
DOI 10.1093/nar/gkac659 Article Journal
2022
Miotto M., Armaos A., Di Rienzo L., Ruocco G., Milanetti E., Tartaglia G.G.
Thermometer: A webserver to predict protein thermal stability
Bioinformatics, vol. 38, (no. 7), pp. 2060-2061
2022
Valentini P., Pierattini B., Zacco E., Mangoni D., Espinoza S., Webster N.A., Andrews B., Carninci P., Tartaglia G.G., Pandolfini L., Gustincich S.
Towards SINEUP-based therapeutics: Design of an in vitro synthesized SINEUP RNA
Molecular Therapy - Nucleic Acids, vol. 27, pp. 1092-1102
2021
Grassmann G., Miotto M., Di Rienzo L., Salaris F., Silvestri B., Zacco E., Rosa A., Tartaglia G.G., Ruocco G., Milanetti E.
A computational approach to investigate tdp-43 rna-recognition motif 2 c-terminal fragments aggregation in amyotrophic lateral sclerosis
Biomolecules, vol. 11, (no. 12)
2021
Gaziano L., Giambartolomei C., Pereira A.C., Gaulton A., Posner D.C., Swanson S.A., Ho Y.-L., Iyengar S.K., Kosik N.M., Vujkovic M., Gagnon D.R., Bento A.P., Barrio-Hernandez I., Ronnblom L., Hagberg N., Lundtoft C., Langenberg C., Pietzner M., Valentine D., Gustincich S., Tartaglia G.G., Allara E., Surendran P., Burgess S., Zhao J.H., Peters J.E., Prins B.P., Angelantonio E.D., Devineni P., Shi Y., Lynch K.E., DuVall S.L., Garcon H., Thomann L.O., Zhou J.J., Gorman B.R., Huffman J.E., O'Donnell C.J., Tsao P.S., Beckham J.C., Pyarajan S., Muralidhar S., Huang G.D., Ramoni R., Beltrao P., Danesh J., Hung A.M., Chang K.-M., Sun Y.V., Joseph J., Leach A.R., Edwards T.L., Cho K., Gaziano J.M., Butterworth A.S., Casas J.P.
Actionable druggable genome-wide Mendelian randomization identifies repurposing opportunities for COVID-19
Nature Medicine, vol. 27, (no. 4), pp. 668-676
2021
Monti M., Armaos A., Fantini M., Pastore A., Tartaglia G.G.
Aggregation is a Context-Dependent Constraint on Protein Evolution
Frontiers in Molecular Biosciences, vol. 8
2021
Armaos A., Colantoni A., Proietti G., Rupert J., Tartaglia G.G.
CatRAPID omics v2.0: Going deeper and wider in the prediction of protein-RNA interactions
Nucleic Acids Research, vol. 49, (no. 1), pp. W72-W79