Pubblicazioni
2024
Mulroney L., Coscujuela-Tarrero L., Maragno P., Rubolino C., Maestri S., Furlan M., Marzi M.J., Fitzgerald T., Leonardi T., Pelizzola M., Birney E., Nicassio F.
A comprehensive survey of RNA modifications in a human transcriptome
bioRxiv
2024
Maestri S., Furlan M., Mulroney L., Tarrero L.C., Ugolini C., Pozza F.D., Leonardi T., Birney E., Nicassio F., Pelizzola M.
Benchmarking of computational methods for m6A profiling with Nanopore direct RNA sequencing
Briefings in Bioinformatics, vol. 25, (no. 2)
2023
Giambruno R., Zacco E., Ugolini C., Vandelli A., Mulroney L., DOnghia M., Giuliani B., Criscuolo E., Castelli M., Clementi N., Clementi M., Mancini N., Bonaldi T., Gustincich S., Leonardi T., Tartaglia G., Nicassio F.
Discovering host protein interactions specific for SARS-CoV-2 RNA genome
Molecular Therapy - Nucleic Acids
2023
Giambruno R., Zacco E., Ugolini C., Vandelli A., Mulroney L., D'Onghia M., Giuliani B., Criscuolo E., Castelli M., Clementi N., Clementi M., Mancini N., Bonaldi T., Gustincich S., Leonardi T., Tartaglia G.G., Nicassio F.
Unveiling the role of PUS7-mediated pseudouridylation in host protein interactions specific for the SARS-CoV-2 RNA genome
Molecular Therapy - Nucleic Acids, vol. 34
2023
Mulroney L., Birney E., Leonardi T., Nicassio F.
Using Nanocompore to Identify RNA Modifications from Direct RNA Nanopore Sequencing Data
Current Protocols, vol. 3, (no. 2)
2022
Mulroney L., Wulf M.G., Schildkraut I., Tzertzinis G., Buswell J., Jain M., Olsen H., Corrêa I. R. Jr., Akeson M., Ettwiller L.
Identification of human poly(A) RNA isoform scaffolds using nanopore sequencing
RNA, vol. 28, pp. 162-176
2022
Ugolini C., Mulroney L., Leger A., Castelli M., Criscuolo E., Williamson M.K., Davidson A.D., Almuqrin A., Giambruno R., Jain M., Frige G., Olsen H., Tzertzinis G., Schildkraut I., Wulf M.G., Correa I.R., Ettwiller L., Clementi N., Clementi M., Mancini N., Birney E., Akeson M., Nicassio F., Matthews D.A., Leonardi T.
Nanopore ReCappable sequencing maps SARS-CoV-2 5′ capping sites and provides new insights into the structure of sgRNAs
Nucleic Acids Research, vol. 50, (no. 6), pp. 3475-3489
2022
Vo J. M., Mulroney L., Quick-Cleveland J., Jain M., Akeson M., Ares M.
Synthesis of modified nucleotide polymers by the poly (U) polymerase Cid1: application to direct RNA sequencing on nanopores
RNA, vol. 27, pp. 1497-1511
2021
Furlan M., Delgado-Tejedor A., Mulroney L., Pelizzola M., Novoa E.M., Leonardi T.
Computational methods for RNA modification detection from nanopore direct RNA sequencing data
RNA Biology, vol. 18, (no. S1), pp. 31-40
2021
Ugolini C., Mulroney L., Leger A., Castelli M., Criscuolo E., Kavanagh Williamson M., Davidson A.D., Almuqrin A., Giambruno R., Jain M., Frige G., Olsen H., Tzertzinis G., Schildkraut I., Wulf M.G., Corrêa I.R., Ettwiller L., Clementi N., Clementi M., Mancini N., Birney E., Akeson M., Nicassio N., Matthews D.A., Leonardi T.
Nanopore ReCappable Sequencing maps SARS-CoV-2 5′ capping sites and provides new insights into the structure of sgRNAs
bioRxiv
2021
Nivala J., Mulroney L., Luan Q., Abu-Shumays R., Akeson M.
Unfolding and Translocation of Proteins Through an Alpha-Hemolysin Nanopore by ClpXP
Nanopore Technology. Methods in Molecular Biology, Publisher: Humana, New York, NY
2020
Mulroney L.
Identification of full-length transcript isoforms using nanopore sequencing of individual RNA strands
PhD Thesis
PhD Thesis
Book
2019
Smith AM., Jain M., Mulroney L., Garalde DR., Akeson M.
Reading canonical and modified nucleobases in 16S ribosomal RNA using nanopore native RNA sequencing
PLoS ONE, vol. 14, (no. 5), pp. e0216709
2014
Nivala J., Mulroney L., Li G., Schreiber J., Akeson M.
Discrimination among protein variants using an unfoldase-coupled nanopore
ACS Nano, vol. 8, (no. 12), pp. 12365-12375