IIT Publications Search

Publications
2022
Cava C., Armaos A., Lang B., Tartaglia G.G., Castiglioni I.
Identification of long non-coding RNAs and RNA binding proteins in breast cancer subtypes
Scientific Reports, vol. 12, (no. 1)
2022
Vandelli A., Vocino G., Tartaglia G.G.
Phase Separation Drives SARS-CoV-2 Replication: A Hypothesis
Frontiers in Molecular Biosciences, vol. 9
2022
Cerase A., Calabrese J.M., Tartaglia G.G.
Phase separation drives X-chromosome inactivation
Nature Structural and Molecular Biology, vol. 29, (no. 3), pp. 183-185
Note Journal
2022
Delli Ponti R., Tartaglia G.G.
Predicting RNA Secondary Structure Using In Vitro and In Vivo Data
Methods in molecular biology (Clifton, N.J.), vol. 2404, pp. 43-52
Book Chapter Book Series
2022
Zacco E., Kantelberg O., Milanetti E., Armaos A., Panei F.P., Gregory J., Jeacock K., Clarke D.J., Chandran S., Ruocco G., Gustincich S., Horrocks M.H., Pastore A., Tartaglia G.G.
Probing TDP-43 condensation using an in silico designed aptamer
Nature Communications, vol. 13, (no. 1)
2022
Miotto M., Armaos A., Di Rienzo L., Ruocco G., Milanetti E., Tartaglia G.G.
Thermometer: A webserver to predict protein thermal stability
Bioinformatics, vol. 38, (no. 7), pp. 2060-2061
Article Journal
2022
Valentini P., Pierattini B., Zacco E., Mangoni D., Espinoza S., Webster N.A., Andrews B., Carninci P., Tartaglia G.G., Pandolfini L., Gustincich S.
Towards SINEUP-based therapeutics: Design of an in vitro synthesized SINEUP RNA
Molecular Therapy - Nucleic Acids, vol. 27, pp. 1092-1102
2021
Grassmann G., Miotto M., Di Rienzo L., Salaris F., Silvestri B., Zacco E., Rosa A., Tartaglia G.G., Ruocco G., Milanetti E.
A computational approach to investigate tdp-43 rna-recognition motif 2 c-terminal fragments aggregation in amyotrophic lateral sclerosis
Biomolecules, vol. 11, (no. 12)
2021
Gaziano L., Giambartolomei C., Pereira A.C., Gaulton A., Posner D.C., Swanson S.A., Ho Y.-L., Iyengar S.K., Kosik N.M., Vujkovic M., Gagnon D.R., Bento A.P., Barrio-Hernandez I., Ronnblom L., Hagberg N., Lundtoft C., Langenberg C., Pietzner M., Valentine D., Gustincich S., Tartaglia G.G., Allara E., Surendran P., Burgess S., Zhao J.H., Peters J.E., Prins B.P., Angelantonio E.D., Devineni P., Shi Y., Lynch K.E., DuVall S.L., Garcon H., Thomann L.O., Zhou J.J., Gorman B.R., Huffman J.E., O'Donnell C.J., Tsao P.S., Beckham J.C., Pyarajan S., Muralidhar S., Huang G.D., Ramoni R., Beltrao P., Danesh J., Hung A.M., Chang K.-M., Sun Y.V., Joseph J., Leach A.R., Edwards T.L., Cho K., Gaziano J.M., Butterworth A.S., Casas J.P.
Actionable druggable genome-wide Mendelian randomization identifies repurposing opportunities for COVID-19
Nature Medicine, vol. 27, (no. 4), pp. 668-676
2021
Monti M., Armaos A., Fantini M., Pastore A., Tartaglia G.G.
Aggregation is a Context-Dependent Constraint on Protein Evolution
Frontiers in Molecular Biosciences, vol. 8
2021
Armaos A., Colantoni A., Proietti G., Rupert J., Tartaglia G.G.
CatRAPID omics v2.0: Going deeper and wider in the prediction of protein-RNA interactions
Nucleic Acids Research, vol. 49, (no. 1), pp. W72-W79
2021
Di Rienzo L., Monti M., Milanetti E., Miotto M., Boffi A., Tartaglia G.G., Ruocco G.
Computational optimization of angiotensin-converting enzyme 2 for SARS-CoV-2 Spike molecular recognition
Computational and Structural Biotechnology Journal, vol. 19, pp. 3006-3014
2021
Battistelli C., Garbo S., Riccioni V., Montaldo C., Santangelo L., Vandelli A., Strippoli R., Tartaglia G.G., Tripodi M., Cicchini C.
Design and functional validation of a mutant variant of the LncRNA HOTAIR to counteract snail function in epithelial-to-mesenchymal transition
Cancer Research, vol. 81, (no. 1), pp. 103-113
2021
Macho Rendon J., Lang B., Ramos Llorens M., Gaetano Tartaglia G., Torrent Burgas M.
DualSeqDB: the host-pathogen dual RNA sequencing database for infection processes
Nucleic Acids Research, vol. 49, (no. D1), pp. D687-D693
2021
Lang B., Yang J.-S., Garriga-Canut M., Speroni S., Aschern M., Gili M., Hoffmann T., Tartaglia G.G., Maurer S.P.
Matrix-screening reveals a vast potential for direct protein-protein interactions among RNA binding proteins
Nucleic Acids Research, vol. 49, (no. 12), pp. 6702-6721

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