Publications
2024
Murphy D., Salataj E., Di Giammartino D.C., Rodriguez-Hernaez J., Kloetgen A., Garg V., Char E., Uyehara C.M., Ee L.-S., Lee U.J., Stadtfeld M., Hadjantonakis A.-K., Tsirigos A., Polyzos A., Apostolou E.
3D Enhancer–promoter networks provide predictive features for gene expression and coregulation in early embryonic lineages
Nature Structural and Molecular Biology, vol. 31, (no. 1), pp. 125-140
Article
Journal
2024
Gözde F., Landuzzi F., Brambilla A., Charrance D., Furia F., Trova S., Peracino A., Camenisch G., Waldvogel D., Howard-McCombe J., Spelorzi Y., Henzen E., Bernagozzi A., Coppe A., Christille J.M., Vecchi M., Vozzi D., Cavalli A., Bassano B., Gustincich S., Croll D., Pandolfini L., Grossen C.
A highly contiguous reference genome for the Alpine ibex (Capra ibex)
bioRxiv
Article
Journal
2024
Setti A., Mariani D., Castagnetti F., Vitiello E., Stufera Mecarelli L., D'Angelo A., Santini T., di Timoteo G., Giuliani A., Perego E., Zappone S., Liessi N., Armirotti A., Vicidomini G., Bozzoni I.
ALS-associated FUS mutation reshapes the RNA and protein composition of Stress Granules
The RNA Society 29th Annual Meeting
Poster
Conference
2024
Myers S.H., Poppi L., Rinaldi F., Veronesi M., Ciamarone A., Previtali V., Bagnolini G., Schipani F., Ortega Martinez J.A., Girotto S., Di Stefano G., Farabegoli F., Walsh N., De Franco F., Roberti M., Cavalli A.
An 19F NMR fragment-based approach for the discovery and development of BRCA2-RAD51 inhibitors to pursuit synthetic lethality in combination with PARP inhibition in pancreatic cancer
European Journal of Medicinal Chemistry, vol. 265
2024
La Rosa L., Spattini C., Pelizzoli R., Pereira R., De Pietri Tonelli D.
A novel immune-competent murine model of brain tumors and its use to evaluate the efficacy of a microRNA-based therapy for medulloblastoma
EMBO Workshop "Microglia in health and disease"
Poster
Conference
2024
Maestri S., Furlan M., Mulroney L., Tarrero L.C., Ugolini C., Pozza F.D., Leonardi T., Birney E., Nicassio F., Pelizzola M.
Benchmarking of computational methods for m6A profiling with Nanopore direct RNA sequencing
Briefings in Bioinformatics, vol. 25, (no. 2)
2024
Galli F., Bragg L., Rossi M., Proietti D., Perani L., Bagicaluppi M., Tonlorenzi R., Sibanda T., Caffarini M., Talapatra A., Santoleri S., Meregalli M., Bano-Otalora B., Bigot A., Bozzoni I., Bonini C., Mouly V., Torrente Y., Cossu G.
Cell-mediated exon skipping normalizes dystrophin expression and muscle function in a new mouse model of Duchenne Muscular Dystrophy
EMBO Molecular Medicine, vol. 16, (no. 4), pp. 927-944
2024
Di Timoteo G., Dattilo D., Bozzoni I.
Characterizing Post-transcriptional Modifications of circRNAs to Investigate Biogenesis and Translation
Methods in molecular biology (Clifton, N.J.), vol. 2765, pp. 263-296
Book Chapter
Book Series
2024
Privitera A.P., DAmico M., Pelicci P.G., Faretta M., Dellino G.I., Diaspro A.
Colocalization analysis between replication and transcription processes along the cell cycle by using a model of oncogene activation
Biophysical Journal, vol. 123, (no. 3), pp. 290a
Article
Journal
2024
Grassmann G., Miotto M., Desantis F., Di Rienzo L., Tartaglia G.G., Pastore A., Ruocco G., Monti M., Milanetti E.
Computational Approaches to Predict Protein-Protein Interactions in Crowded Cellular Environments
Chemical Reviews, vol. 124, (no. 7), pp. 3932-3977
2024
Figueroa Blanco D.R., Vidossich P., De Vivo M.
Correct Nucleotide Selection Is Confined at the Binding Site of Polymerase Enzymes
Journal of Chemical Information and Modeling
Article
Journal
2024
Benedetti M.C., D'andrea T., Colantoni A., Silachev D., de Turris V., Boussadia Z., Babenko V.A., Volovikov E.A., Belikova L., Bogomazova A.N., Pepponi R., Whye D., Buttermore E.D., Tartaglia G.G., Lagarkova M.A., Katanaev V.L., Musayev I., Martinelli S., Fucile S., Rosa A.
Cortical neurons obtained from patient-derived iPSCs with GNAO1 p.G203R variant show altered differentiation and functional properties
Heliyon, vol. 10, (no. 5)
2024
Sharma H., Valentine M. N. Z., Toki N., Nishiyori H. S., Gustincich S., Takahashi H., Carninci P.
Decryption of sequence, structure, and functional features of SINE repeat elements in SINEUP non-coding RNA–mediated post-transcriptional gene regulation
Nature Communications, vol. 15, (no. 1), pp. 1400
Article
Journal
2024
Scala M., Tomati V., Ferla M., Lena M., Cohen J., Fatemi Ali., Brokamp Elly., Bican A., Phillips J., Koziura Mary., Nicouleau M., Rio M., Siquier-Pernet K., Boddaert N., Musante I., Tamburro S., Baldassari S., Iacomino M., Scudieri P., Network Undiagnosed., Rosenfeld Jill., Bellus Gary., Reed Sara., Al Saif Hind., Sanchez Rossana., Walsh Matthew., Cantagrel Vincent., Crunk Amy., Gustincich Stefano., Striano P., Severino M., Salpietro V., Pedemonte N., Zara F.
De novo variants in DENND5B cause a neurodevelopmental disorder.
American Journal of Human Genetics
2024
Ferri L., Menghi V., Licchetta L., Dimartino P., Minardi R., Davì C., Di Vito L., Cifaldi E., Zenesini C., Gozzo F., Pelliccia V., Mariani V., de Spelorzi Y.C.C., Gustincich S., Seri M., Tassi L., Pippucci T., Bisulli F.
Detection of somatic and germline pathogenic variants in adult cohort of drug-resistant focal epilepsies
Epilepsy and Behavior
Article
Journal