Publications
2025
Zampini M., Riva E., Lanino L., Sauta E., Dos Reis R.A., Ejarque R.M.A., Maggioni G., Termanini A., Merlotti A., Campagna A., Dall'Olio L., Kulasekararaj A., Calvi M., Di Vito C., Bonometti A., Rahal D., Croci G., Boveri E., Gianelli U., Ponzoni M., Caselli R., Albertazzi S., Todisco G., Ubezio M., Crisafulli L., Frigo A., Lugli E., Mosca E., Acha P., Ghisletti S., Nicassio F., Santoro A., Diez-Campelo M., Sole F., Ades L., Platzbecker U., Santini V., Fenaux P., Haferlach T., Sallman D., Garcia-Manero G., Mavilio D., Remondini D., Castellani G., D'Amico S., Zeidan A.M., Komrokji R., Kordasti S., Ficara F., Porta M.G.D.
Characterization and Clinical Implications of p53 Dysfunction in Patients With Myelodysplastic Syndromes
Journal of Clinical Oncology
2025
Finocchiaro C., Giuliani B., Tria G., Mimani S., Ugolini C., Marzi M.J., Nicassio F.
Dissecting the contribution of non-coding elements to Breast Cancer plasticity
RNA Society Annual Meeting 2025
Poster
Conference
2024
Mulroney L., Coscujuela-Tarrero L., Maragno P., Rubolino C., Maestri S., Furlan M., Marzi M.J., Fitzgerald T., Leonardi T., Pelizzola M., Birney E., Nicassio F.
A comprehensive survey of RNA modifications in a human transcriptome
bioRxiv
2024
Marzi M.J., Rubolino C., D'Onghia M., Tordonato C., Giuliani B., Nicassio F.
AEGEAN AWARD: Canonical and non-canonical Target-Directed MicroRNA Degradation controls cell fitness and transcriptional plasticity in breast cancer
5th International Aegean Conference on the Long and the Short of Non-Coding RNAs
Poster
Conference
2024
Finocchiaro C., Giuliani B., Marzi M.J., Nicassio F.
A systematic interrogation of lncRNAs in the context of triple-negative breast cancer
ABCD 2024 RNA Biology and Systems Medicine
Poster
Conference
2024
Maestri S., Furlan M., Mulroney L., Tarrero L.C., Ugolini C., Pozza F.D., Leonardi T., Birney E., Nicassio F., Pelizzola M.
Benchmarking of computational methods for m6A profiling with Nanopore direct RNA sequencing
Briefings in Bioinformatics, vol. 25, (no. 2)
2024
Curti L., Rohban S., Bianchi N., Croci O., Andronache A., Barozzi S., Mattioli M., Ricci F., Pastori E., Sberna S., Bellotti S., Accialini A., Ballarino R., Crosetto N., Wade M., Parazzoli D., Campaner S.
CDK12 controls transcription at damaged genes and prevents MYC-induced transcription-replication conflicts
Nature Communications, vol. 15, (no. 1)
2024
Yip C.W., Parr C., Takahashi H., Yasuzawa K., Valentine M., Nishiyori-Sueki H., Ugolini C., Ranzani V., Murata M., Kato M., Kang W., Yip W.H., Shibayama Y., Sim A.D., Chen Y., Shu X., Moody J.D., Umarov R., Chang J., Pandolfini L., Kawashima T., Tagami M., Nobusada T., Kouno T., Gonzalez C.A., Albanese R., Dossena R., Haberman N., Ozaki K., Kasukawa T., Lenhard B., Frith M., Bodega B., Nicassio F., Calviello L., Bienko M., Legnini I., Hilgers V., Gustincich S., Goeke J., Lecellier C.H., Shin J.W., Hon C., Carninci P.
CFC-seq: identification of full-length capped RNAs unveil enhancer-derived transcription.
bioRxiv
Article
Journal
2024
Kumar N.H., Kluever V., Barth E., Krautwurst S., Furlan M., Pelizzola M., Marz M., Fornasiero E.F.
Comprehensive transcriptome analysis reveals altered mRNA splicing and post-transcriptional changes in the aged mouse brain
Nucleic Acids Research, vol. 52, (no. 6), pp. 2865-2885
2024
Dermentzaki G., Furlan M., Tanaka I., Leonardi T., Rinchetti P., Passos P.M.S., Bastos A., Ayala Y.M., Hanna J.H., Przedborski S., Bonanomi D., Pelizzola M., Lotti F.
Depletion of Mettl3 in cholinergic neurons causes adult-onset neuromuscular degeneration
Cell Reports, vol. 43, (no. 4)
2024
Zerbib J., Ippolito M.R., Eliezer Y., De Feudis G., Reuveni E., Savir Kadmon A., Martin S., Vigano S., Leor G., Berstler J., Muenzner J., Mulleder M., Campagnolo E.M., Shulman E.D., Chang T., Rubolino C., Laue K., Cohen-Sharir Y., Scorzoni S., Taglietti S., Ratti A., Stossel C., Golan T., Nicassio F., Ruppin E., Ralser M., Vazquez F., Ben-David U., Santaguida S.
Human aneuploid cells depend on the RAF/MEK/ERK pathway for overcoming increased DNA damage
Nature Communications, vol. 15, (no. 1)
2024
Ippolito M.R., Zerbib J., Eliezer Y., Reuveni E., Vigano S., De Feudis G., Shulman E.D., Kadmon A.S., Slutsky R., Chang T., Campagnolo E.M., Taglietti S., Scorzoni S., Gianotti S., Martin S., Muenzner J., Mulleder M., Rozenblum N., Rubolino C., Ben-Yishay T., Laue K., Cohen-Sharir Y., Vigorito I., Nicassio F., Ruppin E., Ralser M., Vazquez F., Santaguida S., Ben-David U.
Increased RNA and Protein Degradation Is Required for Counteracting Transcriptional Burden and Proteotoxic Stress in Human Aneuploid Cells
Cancer Discovery, vol. 14, (no. 12), pp. 2532-2553
Article
Journal
2024
Pirra Piscazzi M., Marzi M.J., Nicassio F.
Multi-omic lineage tracing predicts the molecular drivers of cancer stem cells in Triple-Negative Breast Cancer evolution
PhD Thesis
Book
2024
Nadalin F., Marzi M.J., Pirra Piscazzi M., Fuentes-Bravo P., Procaccia S., Climent M., Bonetti P., Rubolino C., Giuliani B., Papatheodorou I., Marioni J.C., Nicassio F.
Multi-omic lineage tracing predicts the transcriptional, epigenetic and genetic determinants of cancer evolution
Nature Communications, vol. 15, (no. 1)
Article
Journal
2024
Coscujuela Tarrero L., Fama V., D'Andrea G., Maestri S., de Polo A., Biffo S., Furlan M., Pelizzola M.
Nanodynamo quantifies subcellular RNA dynamics revealing extensive coupling between steps of the RNA life cycle
Nature Communications, vol. 15, (no. 1)
Article
Journal